SubtiBank SubtiBank
yddQ [2019-06-04 11:13:28]
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yddQ [2019-06-04 11:13:28]

similar to isochorismatase
locus
BSU05070
pI
5.69
mw
19.78 kDa
protein length
180 aa Sequence Blast
gene length
543 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    552,616 → 553,158

    The protein

    Protein family

  • [SW|Isochorismatase family] (according to UniProt)

    • Paralogous protein(s)

  • [protein|CF663A76026F915FFE38EE924C7E354A49607F90|YrdC]

    • Structure

  • [PDB|3LQY] (from Oleispira antarctica, 47% identity) [pubmed|22350524]

    • Biological materials

    Mutant

  • MGNA-C125 (yddQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2123 NBRP B. subtilis, Japan]
  • BKE05070 ([gene|5CE3A1F611563E09B3C4657E56397F44F39209B3|yddQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCACCTCTTAAAA, downstream forward: _UP4_TAAAAGAATTTCCTGCGCGA
  • BKK05070 ([gene|5CE3A1F611563E09B3C4657E56397F44F39209B3|yddQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCACCTCTTAAAA, downstream forward: _UP4_TAAAAGAATTTCCTGCGCGA

    • lacZ fusion

  • [regulon|5CE3A1F611563E09B3C4657E56397F44F39209B3|YddQ regulon]

    • References

    Research papers

  • 22350524